adds units of measurement in Layer class

plus moves around fullname/operator, created_at and description/body so
that operator is required while the others aren't
This commit is contained in:
2026-02-16 11:28:17 +01:00
parent b4d7373933
commit ca2cdbfded

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@@ -13,17 +13,17 @@ class Layer:
''' '''
def __init__(self, layer_data): def __init__(self, layer_data):
try: try:
self.operator = layer_data["fullname"]
self.extra = layer_data["metadata_decoded"]["extra_fields"] self.extra = layer_data["metadata_decoded"]["extra_fields"]
self.layer_number = self.extra["Layer Progressive Number"]["value"] # integer self.layer_number = self.extra["Layer Progressive Number"]["value"] # integer
self.target_elabid = self.extra["Target"]["value"] # elabid self.target_elabid = self.extra["Target"]["value"] # elabid
self.laser_system_elabid = self.extra["Laser System"]["value"] # elabid self.laser_system_elabid = self.extra["Laser System"]["value"] # elabid
self.chamber_elabid = self.extra["Chamber"]["value"] # elabid self.chamber_elabid = self.extra["Chamber"]["value"] # elabid
self.rheed_system_elabid = self.extra["RHEED System"]["value"] # elabid self.rheed_system_elabid = self.extra["RHEED System"]["value"] # elabid
self.start_time = layer_data.get("created_at")
self.operator = layer_data.get("fullname")
self.description = layer_data.get("body")
self.deposition_time = self.extra["Duration"]["value"] self.deposition_time = self.extra["Duration"]["value"]
self.deposition_time_unit = self.extra["Duration"]["unit"]
self.repetition_rate = self.extra["Repetition rate"]["value"] self.repetition_rate = self.extra["Repetition rate"]["value"]
self.repetition_rate_unit = self.extra["Repetition rate"]["unit"]
try: try:
self.number_of_pulses = (float(self.deposition_time) * float(self.repetition_rate)).__floor__() self.number_of_pulses = (float(self.deposition_time) * float(self.repetition_rate)).__floor__()
except ValueError: except ValueError:
@@ -34,15 +34,22 @@ class Layer:
Please edit your eLabFTW entry and retry. Please edit your eLabFTW entry and retry.
""") """)
self.temperature = self.extra["Heater temperature"]["value"] # Note: this field used to have a trailing space in its name self.temperature = self.extra["Heater temperature"]["value"] # Note: this field used to have a trailing space in its name
self.temperature_unit = self.extra["Heater temperature"]["unit"]
self.process_pressure = self.extra["Process pressure"]["value"] # Note: this field used to have a trailing space in its name self.process_pressure = self.extra["Process pressure"]["value"] # Note: this field used to have a trailing space in its name
self.process_pressure_unit = self.extra["Process pressure"]["unit"]
self.heating_method = self.extra["Heating Method"]["value"] self.heating_method = self.extra["Heating Method"]["value"]
self.layer_thickness = self.extra["Thickness"]["value"] self.layer_thickness = self.extra["Thickness"]["value"]
self.layer_thickness_unit = self.extra["Thickness"]["unit"]
self.buffer_gas = self.extra["Buffer gas"]["value"] self.buffer_gas = self.extra["Buffer gas"]["value"]
self.heater_target_distance = self.extra["Heater-target distance"]["value"] self.heater_target_distance = self.extra["Heater-target distance"]["value"]
self.heater_target_distance_unit = self.extra["Heater-target distance"]["unit"]
self.laser_fluence = self.extra["Laser Intensity"]["value"] # here fluence = intensity self.laser_fluence = self.extra["Laser Intensity"]["value"] # here fluence = intensity
self.laser_fluence_unit = "J/(s cm^2)"
self.laser_spot_area = self.extra["Spot Area"]["value"] self.laser_spot_area = self.extra["Spot Area"]["value"]
self.laser_spot_area_unit = "mm^2"
try: try:
self.laser_energy = (float(self.laser_fluence) * float(self.laser_spot_area)).__round__(3) self.laser_energy = ( float(self.laser_fluence) * float(self.laser_spot_area) / 100 ).__round__(3)
self.laser_energy_unit = "J/s"
except ValueError: except ValueError:
# Since laser_energy is NOT required, if it can't be calculated warn user but allow the software to continue execution: # Since laser_energy is NOT required, if it can't be calculated warn user but allow the software to continue execution:
print(""" print("""
@@ -61,17 +68,27 @@ class Layer:
self.pre_annealing_pressure = self.extra["Process pressure Pre"]["value"] self.pre_annealing_pressure = self.extra["Process pressure Pre"]["value"]
self.pre_annealing_temperature = self.extra["Heater temperature Pre"]["value"] self.pre_annealing_temperature = self.extra["Heater temperature Pre"]["value"]
self.pre_annealing_duration = self.extra["Duration Pre"]["value"] self.pre_annealing_duration = self.extra["Duration Pre"]["value"]
self.pre_annealing_pressure_unit = self.extra["Process pressure Pre"]["unit"]
self.pre_annealing_temperature_unit = self.extra["Heater temperature Pre"]["unit"]
self.pre_annealing_duration_unit = self.extra["Duration Pre"]["unit"]
# Post annealing section # Post annealing section
self.post_annealing_ambient_gas = self.extra["Buffer gas PA"]["value"] self.post_annealing_ambient_gas = self.extra["Buffer gas PA"]["value"]
self.post_annealing_pressure = self.extra["Process pressure PA"]["value"] self.post_annealing_pressure = self.extra["Process pressure PA"]["value"]
self.post_annealing_temperature = self.extra["Heater temperature PA"]["value"] self.post_annealing_temperature = self.extra["Heater temperature PA"]["value"]
self.post_annealing_duration = self.extra["Duration PA"]["value"] self.post_annealing_duration = self.extra["Duration PA"]["value"]
self.post_annealing_pressure_unit = self.extra["Process pressure PA"]["unit"]
self.post_annealing_temperature_unit = self.extra["Heater temperature PA"]["unit"]
self.post_annealing_duration_unit = self.extra["Duration PA"]["unit"]
# Rejected but suggested by the NeXus standard: # Rejected but suggested by the NeXus standard:
#self.laser_rastering_coefficients = None #self.laser_rastering_coefficients = None
except KeyError as k: except KeyError as k:
# Some keys are not required and can be called through the .get() method - which is permissive and allows null values; # Some keys are not required and can be called through the .get() method - which is permissive and allows null values;
# Other keys are required so if they can't be called (invalid or null) raise error and stop execution of the program: # Other keys are required so if they can't be called (invalid or null) raise error and stop execution of the program:
raise KeyError(f"The provided dictionary lacks a \"{k}\" key. Check the deposition layer entry on eLabFTW and make sure you used the correct Experiment template.") raise KeyError(f"The provided dictionary lacks a \"{k}\" key. Check the deposition layer entry on eLabFTW and make sure you used the correct Experiment template.")
# Optional
self.start_time = layer_data.get("created_at") or None
self.description = layer_data.get("body") or None
def get_instruments(self, apikey): def get_instruments(self, apikey):
raw_lasersys_data = APIHandler(apikey).get_entry_from_elabid(self.laser_system_elabid, entryType="items") raw_lasersys_data = APIHandler(apikey).get_entry_from_elabid(self.laser_system_elabid, entryType="items")
raw_chamber_data = APIHandler(apikey).get_entry_from_elabid(self.chamber_elabid, entryType="items") raw_chamber_data = APIHandler(apikey).get_entry_from_elabid(self.chamber_elabid, entryType="items")