emanuele/parser-eLabFTW-NFFA-DI
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replaces elabid with sample name in the names of output files

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Emanuele D'Amico
2026-02-16 11:49:48 +01:00
parent 41ff025098
commit d094a60725
1 changed files with 3 additions and 2 deletions
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src/main.py
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@@ -222,9 +222,10 @@ if __name__=="__main__":
elabid = input("Enter elabid of your starting sample [default= 1111]: ") or 1111 elabid = input("Enter elabid of your starting sample [default= 1111]: ") or 1111
data = APIHandler(apikey).get_entry_from_elabid(elabid) data = APIHandler(apikey).get_entry_from_elabid(elabid)
sample = Entrypoint(data) sample = Entrypoint(data)
sample_name = sample.name.strip().replace(" ","_")
substrate_object = chain_entrypoint_to_batch(sample) # Substrate-class object substrate_object = chain_entrypoint_to_batch(sample) # Substrate-class object
layers = chain_entrypoint_to_layers(sample) # list of Layer-class objects layers = chain_entrypoint_to_layers(sample) # list of Layer-class objects
result = make_nexus_schema_dictionary(substrate_object, layers) result = make_nexus_schema_dictionary(substrate_object, layers)
# print(make_nexus_schema_dictionary(substrate_object, layers)) # debug # print(make_nexus_schema_dictionary(substrate_object, layers)) # debug
with open (f"output/sample-{elabid}.json", "w") as f: with open (f"output/sample-{sample_name}.json", "w") as f:
json.dump(result, f, indent=3) json.dump(result, f, indent=3)