matrix no more normalized
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@@ -689,9 +689,9 @@ def build_nexus_file(pld_fabrication, output_path, rheed_osc=None, heatmap_matri
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# this is of my own initiative. good???
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# this is of my own initiative. good???
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heatmap.attrs["interpretation"] = "spectrum"
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heatmap.attrs["interpretation"] = "spectrum"
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# suggested by DeepSeek, useful? probably not.
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# suggested by DeepSeek, useful? probably not.
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heatmap.attrs["suggested_colormap"] = "inferno"
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# heatmap.attrs["suggested_colormap"] = "inferno"
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heatmap.attrs["scale_min"] = 0.0
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# heatmap.attrs["scale_min"] = 0.0
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heatmap.attrs["scale_max"] = 1.0
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# heatmap.attrs["scale_max"] = 1.0
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return
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return
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@@ -733,7 +733,7 @@ if __name__ == "__main__":
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# if os.path.isfile("tests/LAO_16min50s_736C_STO.png"): # if PNG
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# if os.path.isfile("tests/LAO_16min50s_736C_STO.png"): # if PNG
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img = Image.open("tests/LAO_16min50s_736C_STO.bmp").convert("L")
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img = Image.open("tests/LAO_16min50s_736C_STO.bmp").convert("L")
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mx = np.array(img, dtype=np.uint8)
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mx = np.array(img, dtype=np.uint8)
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mx = mx.astype(np.float32) / 255.0 # consider deleting???
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# mx = mx.astype(np.float32) / 255.0 # consider deleting???
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build_nexus_file(
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build_nexus_file(
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result,
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result,
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output_path=f"output/sample-{sample_name}-nexus.h5",
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output_path=f"output/sample-{sample_name}-nexus.h5",
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