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parser-eLabFTW-NFFA-DI/glossary.md

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Scientific terms

Public service announcement: I'm not a physicist.

  • PLD deposition: fabrication method.
  • Sample: what is being produced by a deposition. A sample is made up of different stacked layers of material (target) deposited upon another material (substrate).
  • Target: material "consumed" during the deposition.
  • Substrate: material on which the target is deposited.
  • Compound: which material is a target or a substrate made of; substrates of the same batch are made of the same compound.
  • Layer: one of the layers of material of which a sample is composed; every layer can have different properties, both in the physical sense (i.e. shape, thickness...) and regarding their manufacturing process (i.e. frequency of pulses, deposition temperature and pressure...).

eLabFTW glossary

PSA: I'm not a Deltablot developer either.

  • Experiment: main type of entry on eLabFTW, used to store data related to the single experiment.
  • Resource or Item: secondary type of entry on eLabFTW, used to store data related to resources such as raw materials, instruments, machinery etc.
  • Elabid: unique ID used to identify a resource or an experiment; resources and experiments have different indexing and different API endpoints.
  • Categories: experiments or resources with common characteristics are associated by assigning them to the same category - e.g. experiments flagged as "PLD Deposition" contain data on a layer of a sample; categories also come with a mask of parameters (extra fields) which need to be compiled by the user.
  • Metadata: extra data; in eLabFTW it all falls under either the key "metadata" (as a single string of text) or the key "metadata_decoded". Metadata is then divided into "extra_fields" and "extra_fields_groups" - of which usually only the first one contains relevant metadata.
  • ReST API: something I use to get my JSON files; endpoints are the URLs I point my requests to.
  • JSON: fancy dictionaries with important data.

Endpoints

API URL: https://{ELAB_BASE_URL}:{PORT}/api/v2

GET, PATCH, DELETE

  • /items/{elabid}: data on a resource identified by its elabid.
  • /experiments/{elabid}: data on an experiment identified by its elabid.

What is what

At CNR-SPIN @Na we use eLabFTW resources to store:

  • Our samples;
  • Our instruments;
  • Our substrate batches and our PLD targets;
  • The compounds substrates and targets are made of (incl. chemical formula);
  • Other things.

We use experiments to store:

  • Our laboratory journals;
  • The layers a sample is made up of.